PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.005G218900.1
Common NameB456_005G218900, LOC105796222
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 272aa    MW: 30816.1 Da    PI: 6.5012
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.005G218900.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH27.17.3e-09154197755
                         HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         ++ r RR++i ++ +eL +l+P       +K++ ae+L+ A +Y+k+Lq
  Gorai.005G218900.1 154 IAARERRRKITKKTQELGKLVPGG-----TKMNTAEMLQAAFKYVKYLQ 197
                         56799*****************87.....8******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000835.99E-10145200No hitNo description
SuperFamilySSF474599.95E-12146208IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088812.455147196IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.3E-10153203IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.5E-10153202IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.1E-6155197IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 272 aa     Download sequence    Send to blast
MVLSSYYSNC ETDVQNLNSE PTHQITKAVQ ADDHHEQQQQ HLQYYCDPPF ELPLTFLDPC  60
IDLNNNFLHP ENYYSAPLLP YDPLITPYDN FSSYPCPKRH KLIEDHCLMP GFFDGVALNS  120
CPQSMNGVYS LEGTHTVGNC KKISDEKCVS VQSIAARERR RKITKKTQEL GKLVPGGTKM  180
NTAEMLQAAF KYVKYLQAQL GILQLMNSFP ENKEGNRKDK ESMQIVTSSK VQEKLYIEEK  240
CLVPKDFVLS LTTLSRPPLS DELTRLLSSS P*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012481250.10.0PREDICTED: transcription factor bHLH52-like
TrEMBLA0A0D2RJQ80.0A0A0D2RJQ8_G
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1695449
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30670.17e-26bHLH family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]